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Flywheel > 实例探究 > CMU-Pitt BRIDGE Center Standardizes on BIDS with Flywheel’s Research Platform
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CMU-Pitt BRIDGE Center Standardizes on BIDS with Flywheel’s Research Platform

技术
  • 基础设施即服务 (IaaS) - 云计算
  • 平台即服务 (PaaS) - 数据管理平台
适用行业
  • 教育
  • 医疗保健和医院
适用功能
  • 产品研发
  • 质量保证
用例
  • 临床图像分析
服务
  • 云规划/设计/实施服务
  • 数据科学服务
挑战
The Brain Imaging Data Generation and Education Center (BRIDGE) at Carnegie Mellon University (CMU) and the University of Pittsburgh (Pitt) has been an early adopter of BIDS' (Brain Imaging Data Structure). BIDS is an increasingly adopted standard of data organization that allows researchers to more easily share neuroimaging data and software tools across the broad range of research conducted by users scanning at their facilities. The BRIDGE Center leadership sees this technology for standardizing (i.e. organizing, annotating, and describing) data as an important facilitator for replicable analyses and advancing research collaboration to speed discovery. The need for efficient data practices became more evident when the Center decided to purchase another 3-Tesla MRI system in 2019, a decision that would greatly increase the amount of data acquired at the Center.
关于客户
The Brain Imaging Data Generation and Education Center (BRIDGE) at Carnegie Mellon University (CMU) and the University of Pittsburgh (Pitt) is a joint MR research center serving both universities. The center was established in 2018 and has been an early adopter of the Brain Imaging Data Structure (BIDS), a standard for data organization that facilitates the sharing of neuroimaging data and software tools. The center's leadership team includes Co-Directors Dr. Tim Verstynen (CMU) and Dr. Walt Schneider (CMU), Steering Committee Chair Dr. Julie Fiez (Pitt), and Scientific Operations Director Dr. John Pyles (CMU). The center's researchers collect MRI data, but before the implementation of BIDS, they lacked a standard, easy-to-use means to access, process, and share their data.
解决方案
The BRIDGE Center decided to standardize on BIDS with Flywheel's Research Platform. Flywheel automates data collection from the BRIDGE Center's Siemens MRI systems. The BRIDGE Center specified a naming convention used by all researchers for their MRI protocols. Once data is acquired, it is immediately and automatically encrypted and securely transferred to a Flywheel cloud instance controlled by the BRIDGE Center. Because of the standard naming convention, the files and associated metadata are automatically curated to the BIDS standard when they arrive in the cloud. Next, quality control and BIDS preprocessing pipelines are automatically scheduled and run. Finally, each data set is checked for completeness and a summary of the project status can be accessed by researchers in Flywheel.
运营影响
  • Standardization of data acquisition, computation, and sharing using the Brain Imaging Data Structure (BIDS).
  • Automatic encryption and secure transfer of data to a Flywheel cloud instance controlled by the BRIDGE Center.
  • Automatic curation of files and associated metadata to the BIDS standard.

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